#SBATCH --mem-per-cpu=8G # each core 8G, total 8G * 8 = 64G #SBATCH --time=04:00:00 #SBATCH --array=1-10 # number of samples module load StdEnv/2023 module load bwa-mem2/2.2.1 module load gcc/12.3 ...

# -- Step 4: GATK hard filter on INFO field for reliable SNPs (NOT related to N sample size) AND general loose ExcessHet filter # -- Step 5: Check per sample DP and GQ before sample-level filters # -- ...

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